PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g08310.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 471aa    MW: 52202 Da    PI: 4.9977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g08310.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-181269155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+++g
  Vang04g08310.3 12 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 69
                    79*****998.**********855.55976666************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-131269IPR001471AP2/ERF domain
CDDcd000182.72E-311278No hitNo description
SMARTSM003805.5E-341383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-281378IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-181378IPR016177DNA-binding domain
PROSITE profilePS5103221.6541377IPR001471AP2/ERF domain
PRINTSPR003672.1E-81425IPR001471AP2/ERF domain
PRINTSPR003672.1E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MRGKGGPQNS DCKFRGVRQR IWGKWVAEIR EPINGKLVGE KANRLWLGTF STALEAALAY  60
DEAAKAMYGP SARLNFPDPS VEPIHSNGSS SSSGCDKKSP SGSSENDGDV ERAESERNLH  120
QPNEEKPRFS EVGVFEVTQE KLVLCGGCVA DDSIEELKEM TSGFEQCQTS EECKAITSKN  180
IKSEIPEESE GIERELERVL KNSGIGEEDN LLHNEPLDIA MNTGANYCSS SDAAEHDIVE  240
KSEETRGESV ETLKQCELSC SNHCLGCMHN MLPDSNSKPH SEHFNNDRSE ASIARKHTEE  300
VISEILGLCH SKCLKINHDQ SPHEHYRTEH FDDTRTKLKC LECKLRAHSI HYKTQAPIVG  360
DSNYPSMQGI HMFGSGTVGP IESMSQIDAM NNINTSRNSL PGFSSGHSRK LCDLSQQLHK  420
LGGCLPEHWN NMQFADLEVG YDYSFLNPDY DFGLLEEKKL LDVCFPQIGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-161477360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-161477663ATERF1
3gcc_A1e-161477663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497419.10.0PREDICTED: uncharacterized protein LOC106758920
TrEMBLA0A0S3RTW40.0A0A0S3RTW4_PHAAN; Uncharacterized protein
STRINGGLYMA18G43750.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-24ERF family protein